Codesota · Medical · Medical Image Segmentation · Synapse Multi-Organ CTTasks/Medical/Medical Image Segmentation
Medical Image Segmentation · benchmark dataset · 2015 · EN

Synapse Multi-Organ Abdominal CT Segmentation.

18 abdominal CT scans with 13 organ labels. Most widely used multi-organ CT segmentation benchmark. MICCAI 2015 Multi-Atlas Abdomen Labeling Challenge.

Paper Download datasetSubmit a result
§ 01 · Leaderboard

Best published scores.

11 results indexed across 1 metric. Shaded row marks current SOTA; ties broken by submission date.


Primary
mean-dsc · higher is better
mean-dsc· primary
11 rows
#ModelOrgSubmittedPaper / codemean-dsc
01SegMambaOSSXing et al.Jan 2024SegMamba: Long-range Sequential Modeling Mamba For 3D Me… · code86.45
02MedNeXt-LOSSGerman Cancer Research Center (DKFZ)Mar 2023MedNeXt: Transformer-driven Scaling of ConvNets for Medi… · code85.47
03U-Mamba (Bot)OSSWang et al. (University of Toronto)Jan 2024U-Mamba: Enhancing Long-range Dependency for Biomedical … · code85.23
04STU-Net-HOSSZiyan Huang et al.Apr 2023STU-Net: Scalable and Transferable Medical Image Segment… · code84.92
05STU-Net-LOSSZiyan Huang et al.Apr 2023STU-Net: Scalable and Transferable Medical Image Segment… · code84.18
06SegVolOSSBAAI (Beijing Academy of AI)Nov 2023SegVol: Universal and Interactive Volumetric Medical Ima… · code83.06
07nnU-Net v2OSSGerman Cancer Research Center (DKFZ)Mar 2023MedNeXt: Transformer-driven Scaling of ConvNets for Medi… · code82.47
08nnFormerOSSZhou et al.Sep 2021nnFormer: Interleaved Transformer for Volumetric Segment… · code80.86
09Swin UNETROSSNVIDIA (MONAI)Jan 2022Self-Supervised Pre-Training of Swin Transformers for 3D… · code79.13
10TransUNetOSSChen et al. (JHU)Feb 2021TransUNet: Transformers Make Strong Encoders for Medical… · code77.48
11UNETROSSNVIDIA (MONAI)Oct 2021UNETR: Transformers for 3D Medical Image Segmentation · code74.52
Fig 2 · Rows sorted by score within each metric. Shaded row marks SOTA. Dates reflect model or paper release where available, otherwise the date Codesota accessed the source.
§ 03 · Progress

4 steps
of state of the art.

Each row below marks a model that broke the previous record on mean-dsc. Intermediate submissions are kept in the leaderboard above; only SOTA-setting entries are re-listed here.

Higher scores win. Each subsequent entry improved upon the previous best.

SOTA line · mean-dsc
  1. Feb 8, 2021TransUNetChen et al. (JHU)77.48
  2. Sep 7, 2021nnFormerZhou et al.80.86
  3. Mar 17, 2023MedNeXt-LGerman Cancer Research Center (DKFZ)85.47
  4. Jan 24, 2024SegMambaXing et al.86.45
Fig 3 · SOTA-setting models only. 4 entries span Feb 2021 Jan 2024.
§ 04 · Literature

9 papers
tied to this benchmark.

Every paper below corresponds to at least one row in the leaderboard above. Click through for the arXiv preprint and, when available, the reference implementation.

§ 06 · Contribute

Have a score that beats
this table?

Submit a checkpoint and a reproduction script. We will run it, publish the score, and — if it takes the top — annotate the step on the progress chart with your name.

Submit a result Read submission guide
What a submission needs
  • 01A public checkpoint or API endpoint
  • 02A reproduction script with frozen commit + seed
  • 03Declared evaluation environment (Python, deps)
  • 04One row per metric declared by this dataset
  • 05A contact so we can follow up on discrepancies
Synapse Multi-Organ CT — Medical Image Segmentation benchmark · Codesota | CodeSOTA